Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs13083229 chr3:161008125 G/A 7.65E-5 296 28.58 20.43 19.05 KM Plot
CESC rs1324930 chr9:115634639 A/G 3.32E-5 299 21.97 21.18 4.22 KM Plot
CESC rs1324932 chr9:115634198 A/G 3.32E-5 299 4.22 21.18 21.97 KM Plot
CESC rs13275460 chr8:26934007 A/G 1.73E-5 291 27.57 20.63 16.07 KM Plot
CESC rs1350193 chr15:75084281 G/C 6.2E-5 286 15.72 21.07 24.9 KM Plot
CESC rs1382429 chr3:161015153 T/C 2.34E-5 290 25.17 19.42 19.4 KM Plot
CESC rs138584469 chr19:11387380 A/G 6.68E-5 289 17.02 24.63 21.2 KM Plot
CESC rs138829 chr22:50172597 T/C 4.46E-7 294 21.2 26.43 1.73 KM Plot
CESC rs138831 chr22:50177279 G/A 4.89E-7 296 21.2 25.37 1.73 KM Plot
CESC rs139591195 chr10:88200277 C/T 1.18E-14 298 21.17 24.9 3.33 KM Plot
CESC rs141117126 chr5:126096128 C/T 0 290 21.2 20.92 1.73 KM Plot
CESC rs141207107 chr5:668574 C/CT 9.18E-5 287 22.4 18.58 18.5 KM Plot
CESC rs141548504 chr3:129235062 GCACA/G 4.16E-5 297 21.85 20.63 14.73 KM Plot
CESC rs141551785 chr3:129228166 TCTC/T 5.61E-5 293 21.85 20.63 14.73 KM Plot
CESC rs142567179 chr19:11387079 T/G 6.37E-5 288 17.02 24.77 21.2 KM Plot